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CPM
2005
Springer
87views Combinatorics» more  CPM 2005»
15 years 11 months ago
Two Dimensional Parameterized Matching
Two equal length strings, or two equal sized two-dimensional texts, parameterize match (p-match) if there is a one-one mapping (relative to the alphabet) of their characters. Two-...
Carmit Hazay, Moshe Lewenstein, Dekel Tsur
CPM
2005
Springer
97views Combinatorics» more  CPM 2005»
15 years 11 months ago
On the Complexity of Sparse Exon Assembly
Gene structure prediction is one of the most important problems in computational molecular biology. It involves two steps: the first is finding the evidence (e.g. predicting spl...
Carmel Kent, Gad M. Landau, Michal Ziv-Ukelson
CPM
2005
Springer
123views Combinatorics» more  CPM 2005»
15 years 11 months ago
A Simple Fast Hybrid Pattern-Matching Algorithm
Abstract. The Knuth-Morris-Pratt (KMP) pattern-matching algorithm guarantees both independence from alphabet size and worst-case execution time linear in the pattern length; on the...
Frantisek Franek, Christopher G. Jennings, William...
CPM
2005
Springer
142views Combinatorics» more  CPM 2005»
15 years 11 months ago
Assessing the Significance of Sets of Words
Valentina Boeva, Julien Clément, Mireille R...
CPM
2005
Springer
194views Combinatorics» more  CPM 2005»
15 years 11 months ago
DNA Compression Challenge Revisited: A Dynamic Programming Approach
Behshad Behzadi, Fabrice Le Fessant
CPM
2005
Springer
106views Combinatorics» more  CPM 2005»
15 years 11 months ago
An Optimal Algorithm for Online Square Detection
A square is the concatenation of two identical non-empty strings. Let S be the input string which is given character by character. Let m be the (unknown) smallest integer such that...
Gen-Huey Chen, Jin-Ju Hong, Hsueh-I Lu
CPM
2005
Springer
75views Combinatorics» more  CPM 2005»
15 years 11 months ago
Sharper Upper and Lower Bounds for an Approximation Scheme for Consensus-Pattern
Brona Brejová, Daniel G. Brown, Ian M. Harr...
CPM
2005
Springer
103views Combinatorics» more  CPM 2005»
15 years 11 months ago
Inferring a Graph from Path Frequency
Tatsuya Akutsu, Daiji Fukagawa
CPM
2005
Springer
92views Combinatorics» more  CPM 2005»
15 years 11 months ago
A New Periodicity Lemma
Kangmin Fan, William F. Smyth, R. J. Simpson