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BIOINFORMATICS
2011
14 years 9 months ago
libfbi: a C++ implementation for fast box intersection and application to sparse mass spectrometry data
Abstract. This document is a preprint of the following publication: Bioinformatics (2011) 27(8): 1166-1167. Algorithms for sparse data require fast search and subset selection capa...
Marc Kirchner, Buote Xu, Hanno Steen, Judith A. J....
120
Voted
BIOINFORMATICS
2011
14 years 9 months ago
STOCHSIMGPU: parallel stochastic simulation for the Systems Biology Toolbox 2 for MATLAB
Guido Klingbeil, Radek Erban, Mike Giles, Philip K...
131
Voted
BIOINFORMATICS
2011
14 years 9 months ago
A Ruby API to query the Ensembl database for genomic features
Francesco Strozzi, Jan Aerts
BIOINFORMATICS
2011
14 years 9 months ago
FIMO: scanning for occurrences of a given motif
Charles E. Grant, Timothy L. Bailey, William Staff...
BIOINFORMATICS
2011
14 years 9 months ago
A pipeline for RNA-seq data processing and quality assessment
Angela Goncalves, Andrew Tikhonov, Alvis Brazma, M...
BIOINFORMATICS
2011
14 years 9 months ago
BayesPeak - an R package for analysing ChIP-seq data
Jonathan M. Cairns, Christiana Spyrou, Rory Stark,...
BIOINFORMATICS
2011
14 years 9 months ago
When the Web meets the cell: using personalized PageRank for analyzing protein interaction networks
Motivation: Enormous, and constantly increasing quantity of biological information is represented in protein interaction network databases. Most of these data are freely accessibl...
Gábor Iván, Vince Grolmusz
BIOINFORMATICS
2011
15 years 13 days ago
All-atom knowledge-based potential for RNA structure prediction and assessment
Motivation: Over the recent years, the vision that RNA simply serves as information transfer molecule has dramatically changed. The study of the sequence/structure/function relati...
Emidio Capriotti, Tomás Norambuena, Marc A....
125
Voted
BIOINFORMATICS
2011
15 years 25 days ago
RNA-RNA interaction prediction based on multiple sequence alignments
Andrew X. Li, Manja Marz, Jing Qin, Christian M. R...