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BMCBI
2010
189views more  BMCBI 2010»
15 years 7 months ago
High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABERTOOTH
Background: Protein alignments are an essential tool for many bioinformatics analyses. While sequence alignments are accurate for proteins of high sequence similarity, they become...
Florian Teichert, Jonas Minning, Ugo Bastolla, Mar...
BMCBI
2010
122views more  BMCBI 2010»
15 years 7 months ago
Genome3D: A viewer-model framework for integrating and visualizing multi-scale epigenomic information within a three-dimensional
Background: New technologies are enabling the measurement of many types of genomic and epigenomic information at scales ranging from the atomic to nuclear. Much of this new data i...
Thomas M. Asbury, Matt Mitman, Jijun Tang, W. Jim ...
DCC
2010
IEEE
16 years 1 months ago
Advantages of Shared Data Structures for Sequences of Balanced Parentheses
We propose new data structures for navigation in sequences of balanced parentheses, a standard tool for representing compressed trees. The most striking property of our approach is...
Simon Gog, Johannes Fischer
TEI
2010
ACM
160views Hardware» more  TEI 2010»
16 years 1 months ago
Creative idea exploration within the structure of a guiding framework: the card brainstorming game
I present a card brainstorming exercise that transforms a conceptual tangible interaction framework into a tool for creative dialogue and discuss the experiences made in using it....
Eva Hornecker
FLOPS
2010
Springer
16 years 1 months ago
Automatically Generating Counterexamples to Naive Free Theorems
Disproof can be as important as proof in studying programs and programming languages. In particular, side conditions in a statement about program behavior are sometimes best unders...
Daniel Seidel, Janis Voigtländer