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BMCBI
2008
96views more  BMCBI 2008»
15 years 6 months ago
The value of position-specific scoring matrices for assessment of protein allegenicity
Background: Bioinformatics tools are commonly used for assessing potential protein allergenicity. While these methods have achieved good accuracies for highly conserved sequences,...
Shen Jean Lim, Joo Chuan Tong, Fook Tim Chew, Mart...
BMCBI
2008
78views more  BMCBI 2008»
15 years 6 months ago
Genome Environment Browser (GEB): a dynamic browser for visualising high-throughput experimental data in the context of genome f
Background: There is accumulating evidence that the milieu of repeat elements and other nongenic sequence features at a given chromosomal locus, here defined as the genome environ...
Derek Huntley, Y. Amy Tang, Tatyana B. Nesterova, ...
BMCBI
2008
98views more  BMCBI 2008»
15 years 6 months ago
Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios
Background: Illumina Infinium whole genome genotyping (WGG) arrays are increasingly being applied in cancer genomics to study gene copy number alterations and allele-specific aber...
Johan Staaf, Johan Vallon-Christersson, David Lind...
SP
2008
IEEE
138views Security Privacy» more  SP 2008»
15 years 6 months ago
A performance tuning methodology with compiler support
We have developed an environment, based upon robust, existing, open source software, for tuning applications written using MPI, OpenMP or both. The goal of this effort, which inte...
Oscar Hernandez, Barbara M. Chapman, Haoqiang Jin
FCCM
2008
IEEE
160views VLSI» more  FCCM 2008»
16 years 1 months ago
Facilitating Processor-Based DPR Systems for non-DPR Experts
Currently, only Xilinx Field Programmable Gate Arrays (FPGAs) support Dynamic Partial Reconfiguration (DPR). While there is currently some Computer Aided Design (CAD) tool support...
Edward Chen, William A. Gruver, Dorian Sabaz, Lesl...