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IPPS
2009
IEEE
16 years 1 months ago
Core-aware memory access scheduling schemes
Multi-core processors have changed the conventional hardware structure and require a rethinking of system scheduling and resource management to utilize them efficiently. However, ...
Zhibin Fang, Xian-He Sun, Yong Chen, Surendra Byna
IPPS
2009
IEEE
16 years 1 months ago
The Weak Mutual Exclusion problem
In this paper we define the Weak Mutual Exclusion (WME) problem. Analogously to classical Distributed Mutual Exclusion (DME), WME serializes the accesses to a shared resource. Di...
Paolo Romano, Luís Rodrigues, Nuno Carvalho
IPPS
2009
IEEE
16 years 1 months ago
Robust sequential resource allocation in heterogeneous distributed systems with random compute node failures
—The problem of finding efficient workload distribution techniques is becoming increasingly important today for heterogeneous distributed systems where the availability of comp...
Vladimir Shestak, Edwin K. P. Chong, Anthony A. Ma...
IPPS
2009
IEEE
16 years 1 months ago
High-throughput protein structure determination using grid computing
Determining the X-ray crystallographic structures of proteins using the technique of molecular replacement (MR) can be a time and labor-intensive trial-and-error process, involvin...
Jason W. Schmidberger, Blair Bethwaite, Colin Enti...
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IPPS
2009
IEEE
16 years 1 months ago
Dynamic parallelization for RNA structure comparison
In this paper we describe the parallelization of a dynamic programming algorithm used to find common RNA secondary structures including pseudoknots and similar structures. The se...
Eric Snow, Eric Aubanel, Patricia Evans