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ALMOB
2007
155views more  ALMOB 2007»
15 years 6 months ago
Finding coevolving amino acid residues using row and column weighting of mutual information and multi-dimensional amino acid rep
Background: Some amino acid residues functionally interact with each other. This interaction will result in an evolutionary co-variation between these residues – coevolution. Ou...
Rodrigo Gouveia-Oliveira, Anders Gorm Pedersen
AML
2007
68views more  AML 2007»
15 years 6 months ago
A note on weak dividing
We study the notion of weak dividing introduced by S. Shelah. In particular we prove that T is stable iff weak dividing is symmetric. In order to study simple theories Shelah orig...
Byunghan Kim, Niandong Shi
BMCBI
2007
99views more  BMCBI 2007»
15 years 6 months ago
Identifying allosteric fluctuation transitions between different protein conformational states as applied to Cyclin Dependent Ki
Background: The mechanisms underlying protein function and associated conformational change are dominated by a series of local entropy fluctuations affecting the global structure ...
Jenny Gu, Philip E. Bourne
BMCBI
2007
179views more  BMCBI 2007»
15 years 6 months ago
rMotifGen: random motif generator for DNA and protein sequences
Background: Detection of short, subtle conserved motif regions within a set of related DNA or amino acid sequences can lead to discoveries about important regulatory domains such ...
Eric C. Rouchka, C. Timothy Hardin
BMCBI
2007
160views more  BMCBI 2007»
15 years 6 months ago
Convergent algorithms for protein structural alignment
Background: Many algorithms exist for protein structural alignment, based on internal protein coordinates or on explicit superposition of the structures. These methods are usually...
Leandro Martínez, Roberto Andreani, Jos&eac...