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BMCBI
2004
131views more  BMCBI 2004»
15 years 6 months ago
A web services choreography scenario for interoperating bioinformatics applications
Background: Very often genome-wide data analysis requires the interoperation of multiple databases and analytic tools. A large number of genome databases and bioinformatics applic...
Remko de Knikker, Youjun Guo, Jin-long Li, Albert ...
BMCBI
2004
87views more  BMCBI 2004»
15 years 6 months ago
Selection of informative clusters from hierarchical cluster tree with gene classes
Background: A common clustering method in the analysis of gene expression data has been hierarchical clustering. Usually the analysis involves selection of clusters by cutting the...
Petri Törönen
BMCBI
2004
150views more  BMCBI 2004»
15 years 6 months ago
Inter-residue distances derived from fold contact propensities correlate with evolutionary substitution costs
Background: The wealth of information on protein structure has led to a variety of statistical analyses of the role played by individual amino acid types in the protein fold. In p...
Gareth Williams, Patrick Doherty
BMCBI
2002
100views more  BMCBI 2002»
15 years 6 months ago
An algorithm and program for finding sequence specific oligo-nucleotide probes for species identification
Background: The identification of species or species groups with specific oligo-nucleotides as molecular signatures is becoming increasingly popular for bacterial samples. However...
Alexander E. Pozhitkov, Diethard Tautz
ALGORITHMICA
1999
99views more  ALGORITHMICA 1999»
15 years 6 months ago
Evolutionary Trees and Ordinal Assertions
Sequence data for a group of species is often summarized by a distance matrix M where M[s, t] is the dissimilarity between the sequences of species s and t. An ordinal assertion is...
Paul E. Kearney, Ryan Hayward, Henk Meijer