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BMCBI
2006
102views more  BMCBI 2006»
15 years 6 months ago
UVPAR: fast detection of functional shifts in duplicate genes
Background: The imprint of natural selection on gene sequences is often difficult to detect. A plethora of methods have been devised to detect genetic changes due to selective pro...
Vicente Arnau, Miguel Gallach, J. Ignasi Lucas, Ig...
BMCBI
2007
115views more  BMCBI 2007»
15 years 6 months ago
A novel, fast, HMM-with-Duration implementation - for application with a new, pattern recognition informed, nanopore detector
Background: Hidden Markov Models (HMMs) provide an excellent means for structure identification and feature extraction on stochastic sequential data. An HMM-with-Duration (HMMwD) ...
Stephen Winters-Hilt, Carl Baribault
BMCBI
2005
132views more  BMCBI 2005»
15 years 6 months ago
Kalign - an accurate and fast multiple sequence alignment algorithm
Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
Timo Lassmann, Erik L. L. Sonnhammer
AFRICACRYPT
2011
Springer
14 years 9 months ago
Really Fast Syndrome-Based Hashing
Abstract. The FSB (fast syndrome-based) hash function was submitted to the SHA-3 competition by Augot, Finiasz, Gaborit, Manuel, and Sendrier in 2008, after preliminary designs pro...
Daniel J. Bernstein, Tanja Lange, Christiane Peter...
DAGSTUHL
2007
15 years 7 months ago
How Fast can be Algebraic Attacks on Block Ciphers?
In this paper we give a specification of a new block cipher that can be called the Courtois Toy Cipher (CTC). It is quite simple, and yet very much like any other known block ciph...
Nicolas Courtois