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BCB
2010
125views Bioinformatics» more  BCB 2010»
15 years 2 months ago
Protein structure alignment using elastic shape analysis
In this paper we present a method for flexible protein structure alignment based on elastic shape analysis of backbones, in a manner that can incorporate different characteristics...
Wei Liu, Anuj Srivastava, Jinfeng Zhang
BCB
2010
156views Bioinformatics» more  BCB 2010»
15 years 2 months ago
Accelerating HMMER on GPUs by implementing hybrid data and task parallelism
Many biologically motivated problems are expressed as dynamic programming recurrences and are difficult to parallelize due to the intrinsic data dependencies in their algorithms. ...
Narayan Ganesan, Roger D. Chamberlain, Jeremy Buhl...
CAP
2010
15 years 2 months ago
Polynomial homotopies on multicore workstations
Homotopy continuation methods to solve polynomial systems scale very well on parallel machines. In this paper we examine its parallel implementation on multiprocessor multicore wo...
Jan Verschelde, Genady Yoffe
EJASMP
2010
108views more  EJASMP 2010»
15 years 2 months ago
Physically Motivated Environmental Sound Synthesis for Virtual Worlds
A system is described for simulating environmental sound in interactive virtual worlds, using the physical state of objects as control parameters. It contains a unified framework ...
Dylan Menzies
ENTCS
2010
102views more  ENTCS 2010»
15 years 2 months ago
Test Case Generation for Adequacy of Floating-point to Fixed-point Conversion
Porting an application written for personal computer to embedded devices requires conversion of floating-point numbers and operations into fixed-point ones. Testing the conversion...
Tuan-Hung Pham, Anh-Hoang Truong, Wei-Ngan Chin, T...