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IPPS
2007
IEEE
16 years 1 months ago
A Comparative Study of Parallel Metaheuristics for Protein Structure Prediction on the Computational Grid
A comparative study of parallel metaheuristics executed in grid environments is proposed, having as case study a genetic algorithm, a simulated annealing algorithm and a random se...
Alexandru-Adrian Tantar, Nouredine Melab, El-Ghaza...
IPPS
2007
IEEE
16 years 1 months ago
Reconfigurable Architecture for Biological Sequence Comparison in Reduced Memory Space
DNA sequence alignment is a very important problem in bioinformatics. The algorithm proposed by Smith-Waterman (SW) is an exact method that obtains optimal local alignments in qua...
Azzedine Boukerche, Jan Mendonca Correa, Alba Cris...
IPPS
2007
IEEE
16 years 1 months ago
The Adaptive Code Kitchen: Flexible Tools for Dynamic Application Composition
Driven by the increasing componentization of scientific codes, the deployment of high-end system infrastructures such as the Grid, and the desire to support high level problem so...
Pilsung Kang 0002, Mike Heffner, Joy Mukherjee, Na...
IPPS
2007
IEEE
16 years 1 months ago
Memory Optimizations For Fast Power-Aware Sparse Computations
— We consider memory subsystem optimizations for improving the performance of sparse scientific computation while reducing the power consumed by the CPU and memory. We first co...
Konrad Malkowski, Padma Raghavan, Mary Jane Irwin
IPPS
2007
IEEE
16 years 1 months ago
Challenges in Mapping Graph Exploration Algorithms on Advanced Multi-core Processors
Multi-core processors are a shift of paradigm in computer architecture that promises a dramatic increase in performance. But multi-core processors also bring an unprecedented leve...
Oreste Villa, Daniele Paolo Scarpazza, Fabrizio Pe...