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201
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BMCBI
2007
247views more  BMCBI 2007»
15 years 6 months ago
A survey of DNA motif finding algorithms
Background: Unraveling the mechanisms that regulate gene expression is a major challenge in biology. An important task in this challenge is to identify regulatory elements, especi...
Modan K. Das, Ho-Kwok Dai
192
Voted
BMCBI
2006
153views more  BMCBI 2006»
15 years 7 months ago
Discovery of time-delayed gene regulatory networks based on temporal gene expression profiling
Background: It is one of the ultimate goals for modern biological research to fully elucidate the intricate interplays and the regulations of the molecular determinants that prope...
Xia Li, Shaoqi Rao, Wei Jiang, Chuanxing Li, Yun X...
188
Voted
DAGSTUHL
2007
15 years 8 months ago
Programming self developing blob machines for spatial computing.
: This is a position paper introducing blob computing: A Blob is a generic primitive used to structure a uniform computing substrate into an easier-to-program parallel virtual mach...
Frédéric Gruau, Christine Eisenbeis
201
Voted
BMCBI
2007
152views more  BMCBI 2007»
15 years 6 months ago
Recodon: Coalescent simulation of coding DNA sequences with recombination, migration and demography
Background: Coalescent simulations have proven very useful in many population genetics studies. In order to arrive to meaningful conclusions, it is important that these simulation...
Miguel Arenas, David Posada
STOC
2007
ACM
179views Algorithms» more  STOC 2007»
16 years 7 months ago
Towards 3-query locally decodable codes of subexponential length
A q-query Locally Decodable Code (LDC) encodes an n-bit message x as an N-bit codeword C(x), such that one can probabilistically recover any bit xi of the message by querying only...
Sergey Yekhanin