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ESA
2010
Springer
172views Algorithms» more  ESA 2010»
15 years 7 months ago
Algorithmic Meta-theorems for Restrictions of Treewidth
Abstract. Possibly the most famous algorithmic meta-theorem is Courcelle's theorem, which states that all MSO-expressible graph properties are decidable in linear time for gra...
Michael Lampis
IPCO
2010
125views Optimization» more  IPCO 2010»
15 years 8 months ago
A Pumping Algorithm for Ergodic Stochastic Mean Payoff Games with Perfect Information
Abstract. We consider two-person zero-sum stochastic mean payoff games with perfect information, or BWR-games, given by a digraph G = (V = VB VW VR, E), with local rewards r : E R...
Endre Boros, Khaled M. Elbassioni, Vladimir Gurvic...
BMCBI
2010
132views more  BMCBI 2010»
15 years 6 months ago
Data structures and compression algorithms for high-throughput sequencing technologies
Background: High-throughput sequencing (HTS) technologies play important roles in the life sciences by allowing the rapid parallel sequencing of very large numbers of relatively s...
Kenny Daily, Paul Rigor, Scott Christley, Xiaohui ...
BMCBI
2010
135views more  BMCBI 2010»
15 years 6 months ago
GIGA: a simple, efficient algorithm for gene tree inference in the genomic age
Background: Phylogenetic relationships between genes are not only of theoretical interest: they enable us to learn about human genes through the experimental work on their relativ...
Paul D. Thomas
BMCBI
2010
154views more  BMCBI 2010»
15 years 6 months ago
An algorithm for automated closure during assembly
Background: Finishing is the process of improving the quality and utility of draft genome sequences generated by shotgun sequencing and computational assembly. Finishing can invol...
Sergey Koren, Jason R. Miller, Brian Walenz, Grang...