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ISMB
1993
15 years 8 months ago
Computationally Efficient Cluster Representation in Molecular Sequence Megaclassification
Molecular sequence megaclassification is a technique for automated protein sequence analysis and annotation. Implementation of the method has been limited by the need to store and...
David J. States, Nomi L. Harris, Lawrence Hunter
BMCBI
2004
125views more  BMCBI 2004»
15 years 6 months ago
A fast algorithm for determining the best combination of local alignments to a query sequence
Background: Existing sequence alignment algorithms assume that similarities between DNA or amino acid sequences are linearly ordered. That is, stretches of similar nucleotides or ...
Gavin C. Conant, Andreas Wagner
JUCS
2002
90views more  JUCS 2002»
15 years 6 months ago
How Large is the Set of Disjunctive Sequences?
: We consider disjunctive sequences, that is, infinite sequences (-words) having all finite words as infixes. It is shown that the set of all disjunctive sequences can be described...
Ludwig Staiger
NAR
1998
76views more  NAR 1998»
15 years 6 months ago
U-insertion/deletion Edited Sequence Database
Uridine insertion/deletion RNA editing is a posttranscriptional RNA modification occurring in the mitochondria of kinetoplastid protozoa. The U-insertion/ deletion Edited Sequence...
Larry Simpson, Shirley H. Wang, Otavio H. Thiemann...
TCS
2010
15 years 1 months ago
Information measures for infinite sequences
We revisit the notion of computational depth and sophistication for infinite sequences and study the density of the sets of deep and sophisticated infinite sequences. Koppel defin...
Luis Filipe Coelho Antunes, Andre Souto