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BMCBI
2007
142views more  BMCBI 2007»
15 years 6 months ago
Predicting and improving the protein sequence alignment quality by support vector regression
Background: For successful protein structure prediction by comparative modeling, in addition to identifying a good template protein with known structure, obtaining an accurate seq...
Minho Lee, Chan-seok Jeong, Dongsup Kim
MOC
2000
70views more  MOC 2000»
15 years 6 months ago
Extrapolation methods and derivatives of limits of sequences
Let {Sm} be an infinite sequence whose limit or antilimit S can be approximated very efficiently by applying a suitable extrapolation method E0 to {Sm}. Assume that the Sm and henc...
Avram Sidi
IDA
1998
Springer
15 years 6 months ago
Self-Organized-Expert Modular Network for Classification of Spatiotemporal Sequences
We investigate a form of modular neural network for classification with (a) pre-separated input vectors entering its specialist (expert) networks, (b) specialist networks which ar...
Sylvian R. Ray, William H. Hsu
RECOMB
2008
Springer
16 years 7 months ago
Integrating Sequence and Topology for Efficient and Accurate Detection of Horizontal Gene Transfer
Abstract. One phylogeny-based approach to horizontal gene transfer (HGT) detection entails comparing the topology of a gene tree to that of the species tree, and using their differ...
Cuong Than, Guohua Jin, Luay Nakhleh
CLUSTER
2003
IEEE
16 years 3 days ago
A Case Study of Parallel I/O for Biological Sequence Search on Linux Clusters
In this paper we analyze the I/O access patterns of a widely-used biological sequence search tool and implement two variations that employ parallel-I/O for data access based on PV...
Yifeng Zhu, Hong Jiang, Xiao Qin, David R. Swanson