Background: For successful protein structure prediction by comparative modeling, in addition to identifying a good template protein with known structure, obtaining an accurate seq...
Let {Sm} be an infinite sequence whose limit or antilimit S can be approximated very efficiently by applying a suitable extrapolation method E0 to {Sm}. Assume that the Sm and henc...
We investigate a form of modular neural network for classification with (a) pre-separated input vectors entering its specialist (expert) networks, (b) specialist networks which ar...
Abstract. One phylogeny-based approach to horizontal gene transfer (HGT) detection entails comparing the topology of a gene tree to that of the species tree, and using their differ...
In this paper we analyze the I/O access patterns of a widely-used biological sequence search tool and implement two variations that employ parallel-I/O for data access based on PV...
Yifeng Zhu, Hong Jiang, Xiao Qin, David R. Swanson