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COCOA
2007
Springer
16 years 29 days ago
A New Dynamic Programming Algorithm for Multiple Sequence Alignment
Abstract. Multiple sequence alignment (MSA) is one of the most basic and central tasks for many studies in modern biology. In this paper, we present a new progressive alignment alg...
Jean-Michel Richer, Vincent Derrien, Jin-Kao Hao
GECCO
2007
Springer
160views Optimization» more  GECCO 2007»
16 years 28 days ago
A memetic algorithm for the low autocorrelation binary sequence problem
Finding binary sequences with low autocorrelation is a very hard problem with many practical applications. In this paper we analyze several metaheuristic approaches to tackle the ...
José E. Gallardo, Carlos Cotta, Antonio J. ...
IPCCC
2006
IEEE
16 years 24 days ago
Automatically deducing propagation sequences that circumvent a collaborative worm defense
We present an approach to the question of evaluating worm defenses against future, yet unseen and possibly defense-aware worm behavior. Our scheme employs model checking to produc...
Linda Briesemeister, Phillip A. Porras
IPPS
2006
IEEE
16 years 24 days ago
FPGA based architecture for DNA sequence comparison and database search
DNA sequence comparison is a computationally intensive problem, known widely since the competition for human DNA decryption. Database search for DNA sequence comparison is of grea...
Euripides Sotiriades, Christos Kozanitis, Apostolo...
IDA
2005
Springer
16 years 8 days ago
Removing Statistical Biases in Unsupervised Sequence Learning
Unsupervised sequence learning is important to many applications. A learner is presented with unlabeled sequential data, and must discover sequential patterns that characterize the...
Yoav Horman, Gal A. Kaminka