Abstract. Multiple sequence alignment (MSA) is one of the most basic and central tasks for many studies in modern biology. In this paper, we present a new progressive alignment alg...
Finding binary sequences with low autocorrelation is a very hard problem with many practical applications. In this paper we analyze several metaheuristic approaches to tackle the ...
We present an approach to the question of evaluating worm defenses against future, yet unseen and possibly defense-aware worm behavior. Our scheme employs model checking to produc...
DNA sequence comparison is a computationally intensive problem, known widely since the competition for human DNA decryption. Database search for DNA sequence comparison is of grea...
Unsupervised sequence learning is important to many applications. A learner is presented with unlabeled sequential data, and must discover sequential patterns that characterize the...