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ASAP
1996
IEEE
96views Hardware» more  ASAP 1996»
15 years 11 months ago
Kestrel: A Programmable Array for Sequence Analysis
Kestrel is a programmable linear array processor designed for sequence analysis. Among other features, Kestrel includes an 8-bit word, a single-cycle add-and-minimize instruction, ...
Jeffrey D. Hirschberg, Richard Hughey, Kevin Karpl...
NIPS
2008
15 years 8 months ago
An Empirical Analysis of Domain Adaptation Algorithms for Genomic Sequence Analysis
We study the problem of domain transfer for a supervised classification task in mRNA splicing. We consider a number of recent domain transfer methods from machine learning, includ...
Gabriele Schweikert, Christian Widmer, Bernhard Sc...
BMCBI
2008
100views more  BMCBI 2008»
15 years 6 months ago
Extracting transcription factor binding sites from unaligned gene sequences with statistical models
Background: Transcription factor binding sites (TFBSs) are crucial in the regulation of gene transcription. Recently, chromatin immunoprecipitation followed by cDNA microarray hyb...
Chung-Chin Lu, Wei-Hao Yuan, Te-Ming Chen
RECOMB
2002
Springer
16 years 7 months ago
Inferring Piecewise Ancestral History from Haploid Sequences
There has been considerable recent interest in the use of haplotype structure to aid in the design and analysis of case-control association studies searching for genetic predictors...
Russell Schwartz, Andrew G. Clark, Sorin Istrail
ICASSP
2007
IEEE
16 years 1 months ago
Evolutionary Sequence Modeling for Discovery of Peptide Hormones
There are currently a large number of ‘‘orphan’’ G-protein-coupled receptors (GPCRs) whose endogenous ligands (peptide hormones) are unknown. Identification of these pepti...
M. Kemal Sönmez, Lawrence Toll, Nina Zaveri