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CIKM
2006
Springer
15 years 10 months ago
Improving query I/O performance by permuting and refining block request sequences
The I/O performance of query processing can be improved using two complementary approaches. One can try to improve on the buffer and the file system management policies of the DB ...
Xiaoyu Wang, Mitch Cherniack
BIOCOMP
2006
15 years 8 months ago
Filtering Tandem Repeats in DNA Sequences
A tandem repeat is a sequence of two or more contiguous, approximate copies of a pattern. Tandem repeats occur in the genomes of both eukaryotic and prokaryotic organisms. They ar...
Dina Sokol, Justin Tojeira
ISMB
1996
15 years 8 months ago
The Megaprior Heuristic for Discovering Protein Sequence Patterns
Several computeralgorithms for discovering patterns in groups of protein sequences are in use that are basedon fitting the parametersof a statistical model to a group of related s...
Timothy L. Bailey, Michael Gribskov
167
Voted
BMCBI
2007
175views more  BMCBI 2007»
15 years 6 months ago
CLUSS: Clustering of protein sequences based on a new similarity measure
Background: The rapid burgeoning of available protein data makes the use of clustering within families of proteins increasingly important. The challenge is to identify subfamilies...
Abdellali Kelil, Shengrui Wang, Ryszard Brzezinski...
BMCBI
2007
120views more  BMCBI 2007»
15 years 6 months ago
Non-coding sequence retrieval system for comparative genomic analysis of gene regulatory elements
Background: Completion of the human genome sequence along with other species allows for greater understanding of the biochemical mechanisms and processes that govern healthy as we...
Sung Tae Doh, Yunyu Zhang, Matthew H. Temple, Li C...