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BMCBI
2007
233views more  BMCBI 2007»
15 years 7 months ago
160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
Isaac T. S. Li, Warren Shum, Kevin Truong
BMCBI
2006
147views more  BMCBI 2006»
15 years 6 months ago
QPath: a method for querying pathways in a protein-protein interaction network
Background: Sequence comparison is one of the most prominent tools in biological research, and is instrumental in studying gene function and evolution. The rapid development of hi...
Tomer Shlomi, Daniel Segal, Eytan Ruppin, Roded Sh...
IPM
2002
86views more  IPM 2002»
15 years 6 months ago
Traditional IR for web users: a context for general audience digital libraries
The emergence of general audience digital libraries (GADLs) defines a context that represents a hybrid of both ``traditional'' IR, using primarily bibliographic resource...
Dietmar Wolfram, Hong (Iris) Xie
PVLDB
2008
141views more  PVLDB 2008»
15 years 6 months ago
WebTables: exploring the power of tables on the web
The World-Wide Web consists of a huge number of unstructured documents, but it also contains structured data in the form of HTML tables. We extracted 14.1 billion HTML tables from...
Michael J. Cafarella, Alon Y. Halevy, Daisy Zhe Wa...
CLOUDCOM
2010
Springer
15 years 4 months ago
Efficient Metadata Generation to Enable Interactive Data Discovery over Large-Scale Scientific Data Collections
Discovering the correct dataset efficiently is critical for computations and effective simulations in scientific experiments. In contrast to searching web documents over the Intern...
Sangmi Lee Pallickara, Shrideep Pallickara, Milija...