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COMPGEOM
2003
ACM
15 years 11 months ago
Cache-oblivious data structures for orthogonal range searching
We develop cache-oblivious data structures for orthogonal range searching, the problem of finding all T points in a set of N points in Êd lying in a query hyper-rectangle. Cache...
Pankaj K. Agarwal, Lars Arge, Andrew Danner, Bryan...
CP
2008
Springer
15 years 7 months ago
Search Strategies for Rectangle Packing
Rectangle (square) packing problems involve packing all squares with sizes 1 × 1 to n × n into the minimum area enclosing rectangle (respectively, square). Rectangle packing is a...
Helmut Simonis, Barry O'Sullivan
BMCBI
2008
87views more  BMCBI 2008»
15 years 6 months ago
Protein structure search and local structure characterization
Background: Structural similarities among proteins can provide valuable insight into their functional mechanisms and relationships. As the number of available three-dimensional (3...
Shih-Yen Ku, Yuh-Jyh Hu
BMCBI
2007
91views more  BMCBI 2007»
15 years 6 months ago
A mass accuracy sensitive probability based scoring algorithm for database searching of tandem mass spectrometry data
Background: Liquid chromatography coupled with tandem mass spectrometry (LC-MS/MS) has become one of the most used tools in mass spectrometry based proteomics. Various algorithms ...
Hua Xu, Michael A. Freitas
BMCBI
2004
112views more  BMCBI 2004»
15 years 6 months ago
A double classification tree search algorithm for index SNP selection
Background: In population-based studies, it is generally recognized that single nucleotide polymorphism (SNP) markers are not independent. Rather, they are carried by haplotypes, ...
Peisen Zhang, Huitao Sheng, Ryuhei Uehara