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BIRTHDAY
2010
Springer
15 years 11 months ago
Indexing and Searching a Mass Spectrometry Database
Abstract. Database preprocessing in order to create an index often permits considerable speedup in search compared to the iterated query of an unprocessed database. In this paper w...
Søren Besenbacher, Benno Schwikowski, Jens ...
BMCBI
2006
141views more  BMCBI 2006»
15 years 6 months ago
Identification of consensus RNA secondary structures using suffix arrays
Background: The identification of a consensus RNA motif often consists in finding a conserved secondary structure with minimum free energy in an ensemble of aligned sequences. How...
Mohammad Anwar, Truong Nguyen, Marcel Turcotte
BMEI
2008
IEEE
16 years 20 days ago
Comparison of ESI-MS Spectra in MassBank Database
Metabolomics is one of the most important topics in biology and medical science. In metabolomics, metabolites from biological samples are measured by mass spectrometry (MS) and th...
Hisayuki Horai, Masanori Arita, Takaaki Nishioka
BMCBI
2007
144views more  BMCBI 2007»
15 years 6 months ago
Motif kernel generated by genetic programming improves remote homology and fold detection
Background: Protein remote homology detection is a central problem in computational biology. Most recent methods train support vector machines to discriminate between related and ...
Tony Håndstad, Arne J. H. Hestnes, Pål...
BMCBI
2008
111views more  BMCBI 2008»
15 years 6 months ago
VisualRepbase: an interface for the study of occurrences of transposable element families
Background: Repbase is a reference database of eukaryotic repetitive DNA, which includes prototypic sequences of repeats and basic information described in annotations. Repbase al...
Sébastien Tempel, Matthew Jurka, Jerzy Jurk...