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RECOMB
2007
Springer
16 years 6 months ago
QNet: A Tool for Querying Protein Interaction Networks
Molecular interaction databases can be used to study the evolution of molecular pathways across species. Querying such pathways is a challenging computational problem, and recent e...
Banu Dost, Tomer Shlomi, Nitin Gupta 0002, Eytan R...
RECOMB
2007
Springer
16 years 6 months ago
Beyond Galled Trees - Decomposition and Computation of Galled Networks
Reticulate networks are a type of phylogenetic network that are used to represent reticulate evolution involving hybridization, horizontal gene transfer or recombination. The simpl...
Daniel H. Huson, Tobias H. Klöpper
RECOMB
2006
Springer
16 years 6 months ago
Leveraging Information Across HLA Alleles/Supertypes Improves Epitope Prediction
We present a model for predicting HLA class I restricted CTL epitopes. In contrast to almost all other work in this area, we train a single model on epitopes from all HLA alleles a...
David Heckerman, Carl Myers Kadie, Jennifer Listga...
RECOMB
2006
Springer
16 years 6 months ago
A Sublinear-Time Randomized Approximation Scheme for the Robinson-Foulds Metric
The Robinson-Foulds (RF) metric is the measure most widely used in comparing phylogenetic trees; it can be computed in linear time using Day's algorithm. When faced with the n...
Nicholas D. Pattengale, Bernard M. E. Moret
RECOMB
2003
Springer
16 years 6 months ago
Optimizing exact genetic linkage computations
Genetic linkage analysis is a challenging application which requires Bayesian networks consisting of thousands of vertices. Consequently, computing the likelihood of data, which i...
Dan Geiger, Maáyan Fishelson