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BIBE
2007
IEEE
128views Bioinformatics» more  BIBE 2007»
16 years 1 months ago
QOMA2: Optimizing the alignment of many sequences
Abstract—We consider the problem of aligning multiple protein sequences with the goal of maximizing the SP (Sum-of-Pairs) score, when the number of sequences is large. The QOMA (...
Xu Zhang, Tamer Kahveci
CGO
2007
IEEE
16 years 1 months ago
Ubiquitous Memory Introspection
Modern memory systems play a critical role in the performance of applications, but a detailed understanding of the application behavior in the memory system is not trivial to atta...
Qin Zhao, Rodric M. Rabbah, Saman P. Amarasinghe, ...
CLUSTER
2007
IEEE
16 years 1 months ago
Balancing productivity and performance on the cell broadband engine
— The Cell Broadband Engine (BE) is a heterogeneous multicore processor, combining a general-purpose POWER architecture core with eight independent single-instructionmultiple-dat...
Sadaf R. Alam, Jeremy S. Meredith, Jeffrey S. Vett...
CODES
2007
IEEE
16 years 1 months ago
Compile-time decided instruction cache locking using worst-case execution paths
Caches are notorious for their unpredictability. It is difficult or even impossible to predict if a memory access results in a definite cache hit or miss. This unpredictability i...
Heiko Falk, Sascha Plazar, Henrik Theiling
CODES
2007
IEEE
16 years 1 months ago
HW/SW co-design for Esterel processing
We present a co-synthesis approach that accelerates reactive software processing by moving the calculation of complex expressions into external combinational hardware. The startin...
Sascha Gädtke, Claus Traulsen, Reinhard von H...
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