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» Validating associations in biological databases
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BMCBI
2005
151views more  BMCBI 2005»
15 years 6 months ago
ProMiner: rule-based protein and gene entity recognition
Background: Identification of gene and protein names in biomedical text is a challenging task as the corresponding nomenclature has evolved over time. This has led to multiple syn...
Daniel Hanisch, Katrin Fundel, Heinz-Theodor Mevis...
COMPLIFE
2006
Springer
15 years 10 months ago
Beating the Noise: New Statistical Methods for Detecting Signals in MALDI-TOF Spectra Below Noise Level
Background: The computer-assisted detection of small molecules by mass spectrometry in biological samples provides a snapshot of thousands of peptides, protein fragments and prote...
Tim O. F. Conrad, Alexander Leichtle, Andre Hageh&...
AIIA
2005
Springer
15 years 11 months ago
Towards Fault-Tolerant Formal Concept Analysis
Given Boolean data sets which record properties of objects, Formal Concept Analysis is a well-known approach for knowledge discovery. Recent application domains, e.g., for very lar...
Ruggero G. Pensa, Jean-François Boulicaut
SIGMOD
2010
ACM
260views Database» more  SIGMOD 2010»
15 years 11 months ago
Towards proximity pattern mining in large graphs
Mining graph patterns in large networks is critical to a variety of applications such as malware detection and biological module discovery. However, frequent subgraphs are often i...
Arijit Khan, Xifeng Yan, Kun-Lung Wu
BMCBI
2010
88views more  BMCBI 2010»
15 years 6 months ago
Proteome scanning to predict PDZ domain interactions using support vector machines
Background: PDZ domains mediate protein-protein interactions involved in important biological processes through the recognition of short linear motifs in their target proteins. Tw...
Shirley Hui, Gary D. Bader