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IPPS
2006
IEEE
16 years 17 days ago
Parallel implementation of the replica exchange molecular dynamics algorithm on Blue Gene/L
The Replica Exchange method is a popular approach for studying the folding thermodynamics of small to modest size proteins in explicit solvent, since it is easily parallelized. Ho...
Maria Eleftheriou, Aleksandr Rayshubskiy, Jed W. P...
PPOPP
2010
ACM
16 years 3 months ago
Modeling advanced collective communication algorithms on cell-based systems
This paper presents and validates performance models for a variety of high-performance collective communication algorithms for systems with Cell processors. The systems modeled in...
Qasim Ali, Samuel P. Midkiff, Vijay S. Pai
GRID
2000
Springer
15 years 10 months ago
Architectural Models for Resource Management in the Grid
: The concept of coupling geographically distributed (high-end) resources for solving large-scale problems is becoming increasingly popular, forming what is popularly called grid c...
Rajkumar Buyya, Steve J. Chapin, David C. DiNucci
ICS
2009
Tsinghua U.
16 years 1 months ago
Tuned and wildly asynchronous stencil kernels for hybrid CPU/GPU systems
We describe heterogeneous multi-CPU and multi-GPU implementations of Jacobi’s iterative method for the 2-D Poisson equation on a structured grid, in both single- and doublepreci...
Sundaresan Venkatasubramanian, Richard W. Vuduc
ICS
2005
Tsinghua U.
15 years 12 months ago
Continuous Replica Placement schemes in distributed systems
The Replica Placement Problem (RPP) aims at creating a set of duplicated data objects across the nodes of a distributed system in order to optimize certain criteria. Typically, RP...
Thanasis Loukopoulos, Petros Lampsas, Ishfaq Ahmad