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» Using probabilistic model checking in systems biology
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BIBM
2009
IEEE
183views Bioinformatics» more  BIBM 2009»
15 years 11 months ago
Modeling Protein Interaction Networks with Answer Set Programming
—In this paper we propose the use of answer set programming (ASP) to model protein interaction networks. We argue that this declarative formalism rivals the popular boolean netwo...
Timur Fayruzov, Martine De Cock, Chris Cornelis, D...
CORR
2010
Springer
174views Education» more  CORR 2010»
15 years 6 months ago
Hybrid Numerical Solution of the Chemical Master Equation
We present a numerical approximation technique for the analysis of continuous-time Markov chains that describe networks of biochemical reactions and play an important role in the ...
Thomas A. Henzinger, Maria Mateescu, Linar Mikeev,...
DAGM
2010
Springer
15 years 4 months ago
3D Reconstruction Using an n-Layer Heightmap
We present a novel method for 3D reconstruction of urban scenes extending a recently introduced heightmap model. Our model has several advantages for 3D modeling of urban scenes: i...
David Gallup, Marc Pollefeys, Jan-Michael Frahm
ARTS
1997
Springer
15 years 10 months ago
The Verus Language: Representing Time Efficiently with BDDs
There have been significant advances on formal methods to verify complex systems recently. Nevertheless, these methods have not yet been accepted as a realistic alternative to the ...
Sérgio Vale Aguiar Campos, Edmund M. Clarke
MOBISYS
2006
ACM
16 years 6 months ago
Building realistic mobility models from coarse-grained traces
In this paper we present a trace-driven framework capable of building realistic mobility models for the simulation studies of mobile systems. With the goal of realism, this framew...
Jungkeun Yoon, Brian D. Noble, Mingyan Liu, Minkyo...