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» Using probabilistic model checking in systems biology
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JSS
2010
120views more  JSS 2010»
15 years 1 months ago
Handling communications in process algebraic architectural description languages: Modeling, verification, and implementation
Architectural description languages are a useful tool for modeling complex systems at a high level of abstraction. If based on formal methods, they can also serve for enabling the...
Marco Bernardo, Edoardo Bontà, Alessandro A...
WABI
2005
Springer
124views Bioinformatics» more  WABI 2005»
16 years 2 days ago
Reconstructing Metabolic Networks Using Interval Analysis
Recently, there has been growing interest in the modelling and simulation of biological systems. Such systems are often modelled in terms of coupled ordinary differential equation...
Warwick Tucker, Vincent Moulton
IPPS
2007
IEEE
16 years 27 days ago
FixD : Fault Detection, Bug Reporting, and Recoverability for Distributed Applications
Model checking, logging, debugging, and checkpointing/recovery are great tools to identify bugs in small sequential programs. The direct application of these techniques to the dom...
Cristian Tapus, David A. Noblet
149
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SPIN
2000
Springer
15 years 10 months ago
Modeling the ASCB-D Synchronization Algorithm with SPIN: A Case Study
In this paper, we describe our application of SPIN 1 to model an algorithm used to synchronize the clocks of modules that provide periodic real-time communication over a network. W...
Nicholas Weininger, Darren D. Cofer
CAINE
2007
15 years 8 months ago
Parameter Estimation via Analysis of Fuzzy Clusters (PEAF): An Algorithm to Estimate Parameters of Agent-Based Models
Biologically focused, agent-based models need many parameters in order to simulate system dynamics. It is often essential to explore the consequences of many parameter vectors bef...
Shahab Sheikh-Bahaei, C. Anthony Hunt