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BMCBI
2006
124views more  BMCBI 2006»
15 years 5 months ago
Predicting transcription factor binding sites using local over-representation and comparative genomics
Background: Identifying cis-regulatory elements is crucial to understanding gene expression, which highlights the importance of the computational detection of overrepresented tran...
Matthieu Defrance, Hélène Touzet
DOLAP
2004
ACM
15 years 11 months ago
Experimental evidence on partitioning in parallel data warehouses
Parallelism can be used for major performance improvement in large Data warehouses (DW) with performance and scalability challenges. A simple low-cost shared-nothing architecture ...
Pedro Furtado
163
Voted
CCGRID
2003
IEEE
15 years 11 months ago
A Parallel FPT Application For Clusters
Fixed-parameter tractability (FPT) techniques have recently been successful in solving NP-complete problem instances of practical importance which were too large to be solved with...
James Cheetham, Frank K. H. A. Dehne, Andrew Rau-C...
BMCBI
2011
15 years 23 days ago
Errors in CGAP xProfiler and cDNA DGED: the importance of library parsing and gene selection algorithms
Background: The Cancer Genome Anatomy Project (CGAP) xProfiler and cDNA Digital Gene Expression Displayer (DGED) have been made available to the scientific community over a decade...
Andrew T. Milnthorpe, Mikhail Soloviev
175
Voted
BIBE
2003
IEEE
133views Bioinformatics» more  BIBE 2003»
15 years 11 months ago
A Computational Pipeline for Protein Structure Prediction and Analysis at Genome Scale
The tertiary (3D) structure of a protein contains the essential information for understanding the biological function of the protein at the molecular and cellular levels. Traditio...
Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyl...