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BMCBI
2011
15 years 2 months ago
DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI
Background: Next-generation sequencing technologies have led to the high-throughput production of sequence data (reads) at low cost. However, these reads are significantly shorter...
Yongchao Liu, Bertil Schmidt, Douglas L. Maskell
TCBB
2011
15 years 2 months ago
A Partial Set Covering Model for Protein Mixture Identification Using Mass Spectrometry Data
—Protein identification is a key and essential step in mass spectrometry (MS) based proteome research. To date, there are many protein identification strategies that employ eithe...
Zengyou He, Can Yang, Weichuan Yu
264
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WWW
2011
ACM
15 years 2 months ago
A word at a time: computing word relatedness using temporal semantic analysis
Computing the degree of semantic relatedness of words is a key functionality of many language applications such as search, clustering, and disambiguation. Previous approaches to c...
Kira Radinsky, Eugene Agichtein, Evgeniy Gabrilovi...
ICIP
2002
IEEE
16 years 8 months ago
Matching pursuits video coding using generalized bit-planes
The Matching Pursuits (MP) coding method has been employed successfully in video coding. In it, the motion compensated frame difference is decomposed on an overcomplete dictionary...
Alexandre G. Ciancio, Eduardo A. B. da Silva, Rog&...
PPOPP
2010
ACM
16 years 4 months ago
Using data structure knowledge for efficient lock generation and strong atomicity
To achieve high-performance on multicore systems, sharedmemory parallel languages must efficiently implement atomic operations. The commonly used and studied paradigms for atomici...
Gautam Upadhyaya, Samuel P. Midkiff, Vijay S. Pai