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BMCBI
2007
181views more  BMCBI 2007»
15 years 6 months ago
Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases
Background: In recent years, mammalian protein-protein interaction network databases have been developed. The interactions in these databases are either extracted manually from lo...
Seth I. Berger, Jeremy M. Posner, Avi Ma'ayan
BMCBI
2008
149views more  BMCBI 2008»
15 years 6 months ago
All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning
Background: Automated extraction of protein-protein interactions (PPI) is an important and widely studied task in biomedical text mining. We propose a graph kernel based approach ...
Antti Airola, Sampo Pyysalo, Jari Björne, Tap...
IPPS
2007
IEEE
16 years 15 days ago
An Optimizing Compiler for Parallel Chemistry Simulations
Well designed domain specific languages enable the easy expression of problems, the application of domain specific optimizations, and dramatic improvements in productivity for t...
Jun Cao, Ayush Goyal, Samuel P. Midkiff, James M. ...
IPPS
2003
IEEE
15 years 11 months ago
Performance Monitoring and Evaluation of a UPC Implementation on a NUMA Architecture
UPC is an explicit parallel extension of ANSI C, which has been gaining rising attention from vendors and users. In this work, we consider the low-level monitoring and experimenta...
François Cantonnet, Yiyi Yao, Smita Annared...
GECCO
2009
Springer
109views Optimization» more  GECCO 2009»
15 years 10 months ago
A genetic algorithm for learning significant phrase patterns in radiology reports
Radiologists disagree with each other over the characteristics and features of what constitutes a normal mammogram and the terminology to use in the associated radiology report. R...
Robert M. Patton, Thomas E. Potok, Barbara G. Beck...