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BMCBI
2011
15 years 1 months ago
Hierarchical graphs for rule-based modeling of biochemical systems
Background: In rule-based modeling, graphs are used to represent molecules: a colored vertex represents a component of a molecule, a vertex attribute represents the internal state...
Nathan W. Lemons, Bin Hu, William S. Hlavacek
DIS
2004
Springer
16 years 2 days ago
Predictive Graph Mining
Abstract. Graph mining approaches are extremely popular and effective in molecular databases. The vast majority of these approaches first derive interesting, i.e. frequent, patte...
Andreas Karwath, Luc De Raedt
GG
2004
Springer
16 years 2 days ago
Event-Driven Grammars: Towards the Integration of Meta-modelling and Graph Transformation
In this work we introduce event-driven grammars, a kind of graph grammars that are especially suited for visual modelling environments generated by meta-modelling. Rules in these g...
Esther Guerra, Juan de Lara
ECAL
2003
Springer
15 years 12 months ago
Visualizing Evolutionary Dynamics of Self-Replicators Using Graph-Based Genealogy
We present a general method for evaluating and visualizing evolutionary dynamics of self-replicators using a graph-based representation for genealogy. Through a transformation from...
Chris Salzberg, Antony Antony, Hiroki Sayama
ICCS
2003
Springer
15 years 12 months ago
Using Conceptual Graphs to Capture Semantics of Agent Communication
Agent communication languages such as KQML and the FIPA ACL serve as metalanguages to define software agent message-passing protocols. These metalanguages are incompatible with eac...
Lois W. Harper, Harry S. Delugach