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BMCBI
2011
14 years 10 months ago
Learning sparse models for a dynamic Bayesian network classifier of protein secondary structure
Background: Protein secondary structure prediction provides insight into protein function and is a valuable preliminary step for predicting the 3D structure of a protein. Dynamic ...
Zafer Aydin, Ajit Singh, Jeff Bilmes, William Staf...
INLG
2004
Springer
15 years 12 months ago
Resolving Structural Ambiguity in Generated Speech
Ambiguity in the output is a concern for NLG in general. This paper considers the case of structural ambiguity in spoken language generation. We present an algorithm which inserts ...
Chris Mellish
BMCBI
2008
109views more  BMCBI 2008»
15 years 6 months ago
ConStruct: Improved construction of RNA consensus structures
Background: Aligning homologous non-coding RNAs (ncRNAs) correctly in terms of sequence and structure is an unresolved problem, due to both mathematical complexity and imperfect s...
Andreas Wilm, Kornelia Linnenbrink, Gerhard Steger
BMCBI
2004
120views more  BMCBI 2004»
15 years 6 months ago
An approach to large scale identification of non-obvious structural similarities between proteins
Background: A new sequence independent bioinformatics approach allowing genome-wide search for proteins with similar three dimensional structures has been developed. By utilizing ...
Artem Cherkasov, Steven J. M. Jones
ACL
2006
15 years 8 months ago
Minimum Risk Annealing for Training Log-Linear Models
When training the parameters for a natural language system, one would prefer to minimize 1-best loss (error) on an evaluation set. Since the error surface for many natural languag...
David A. Smith, Jason Eisner