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HPCA
2006
IEEE
16 years 7 months ago
Last level cache (LLC) performance of data mining workloads on a CMP - a case study of parallel bioinformatics workloads
With the continuing growth in the amount of genetic data, members of the bioinformatics community are developing a variety of data-mining applications to understand the data and d...
Aamer Jaleel, Matthew Mattina, Bruce L. Jacob
RECOMB
2008
Springer
16 years 7 months ago
Bootstrapping the Interactome: Unsupervised Identification of Protein Complexes in Yeast
Protein interactions and complexes are major components of biological systems. Recent genome-wide applications of tandem affinity purification (TAP) in yeast have increased signifi...
Caroline C. Friedel, Jan Krumsiek, Ralf Zimmer
RECOMB
2005
Springer
16 years 7 months ago
Constructing a Smallest Refining Galled Phylogenetic Network
Reticulation events occur frequently in many types of species. Therefore, to develop accurate methods for reconstructing phylogenetic networks in order to describe evolutionary his...
Trinh N. D. Huynh, Jesper Jansson, Nguyen Bao Nguy...
RECOMB
2002
Springer
16 years 7 months ago
A new approach to analyzing gene expression time series data
We present algorithms for time-series gene expression analysis that permit the principled estimation of unobserved timepoints, clustering, and dataset alignment. Each expression p...
Ziv Bar-Joseph, Georg Gerber, David K. Gifford, To...
STOC
2005
ACM
130views Algorithms» more  STOC 2005»
16 years 7 months ago
Low-distortion embeddings of general metrics into the line
A low-distortion embedding between two metric spaces is a mapping which preserves the distances between each pair of points, up to a small factor called distortion. Low-distortion...
Mihai Badoiu, Julia Chuzhoy, Piotr Indyk, Anastasi...