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IPPS
2009
IEEE
16 years 1 months ago
Parallel reconstruction of neighbor-joining trees for large multiple sequence alignments using CUDA
Computing large multiple protein sequence alignments using progressive alignment tools such as ClustalW requires several hours on state-of-the-art workstations. ClustalW uses a th...
Yongchao Liu, Bertil Schmidt, Douglas L. Maskell
IPPS
2009
IEEE
16 years 1 months ago
On scheduling dags to maximize area
A new quality metric, called area, is introduced for schedules that execute dags, i.e., computations having intertask dependencies. Motivated by the temporal unpredictability enco...
Gennaro Cordasco, Arnold L. Rosenberg
ISPAN
2009
IEEE
16 years 1 months ago
Cyberaide Creative: On-Demand Cyberinfrastructure Provision in Clouds
As demand for grid and cloud computing solutions increases, the need for user oriented software to provide access to theses resources also increases. Until recently the use of com...
Casey Rathbone, Lizhe Wang, Gregor von Laszewski, ...
CNHPCA
2009
Springer
16 years 1 months ago
Benchmarking Parallel I/O Performance for a Large Scale Scientific Application on the TeraGrid
This paper is a report on experiences in benchmarking I/O performance on leading computational facilities on the NSF TeraGrid network with a large scale scientific application. In...
Frank Löffler, Jian Tao, Gabrielle Allen, Eri...
EUROPAR
2009
Springer
16 years 1 months ago
Adaptive Parallel Householder Bidiagonalization
With the increasing use of large image and video archives and high-resolution multimedia data streams in many of today’s research and application areas, there is a growing need f...
Fangbin Liu, Frank J. Seinstra