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» Theories with the Independence Property
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STOC
2010
ACM
181views Algorithms» more  STOC 2010»
15 years 6 months ago
Load balancing and orientability thresholds for random hypergraphs
Let h > w > 0 be two fixed integers. Let H be a random hypergraph whose hyperedges are uniformly of size h. To w-orient a hyperedge, we assign exactly w of its vertices posi...
Pu Gao, Nicholas C. Wormald
BMCBI
2010
109views more  BMCBI 2010»
15 years 6 months ago
Structural alphabets derived from attractors in conformational space
Background: The hierarchical and partially redundant nature of protein structures justifies the definition of frequently occurring conformations of short fragments as `states'...
Alessandro Pandini, Arianna Fornili, Jens Kleinjun...
BMCBI
2007
179views more  BMCBI 2007»
15 years 6 months ago
rMotifGen: random motif generator for DNA and protein sequences
Background: Detection of short, subtle conserved motif regions within a set of related DNA or amino acid sequences can lead to discoveries about important regulatory domains such ...
Eric C. Rouchka, C. Timothy Hardin
BMCBI
2010
133views more  BMCBI 2010»
15 years 6 months ago
Integrated prediction of one-dimensional structural features and their relationships with conformational flexibility in helical
Background: Many structural properties such as solvent accessibility, dihedral angles and helix-helix contacts can be assigned to each residue in a membrane protein. Independent s...
Shandar Ahmad, Yumlembam Hemjit Singh, Yogesh Paud...
BMCBI
2010
150views more  BMCBI 2010»
15 years 6 months ago
MCL-CAw: a refinement of MCL for detecting yeast complexes from weighted PPI networks by incorporating core-attachment structure
Background: The reconstruction of protein complexes from the physical interactome of organisms serves as a building block towards understanding the higher level organization of th...
Sriganesh Srihari, Kang Ning, Hon Wai Leong