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» Theoretical and Experimental DNA Computation
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BMCBI
2005
94views more  BMCBI 2005»
15 years 6 months ago
Measuring similarities between transcription factor binding sites
Background: Collections of transcription factor binding profiles (Transfac, Jaspar) are essential to identify regulatory elements in DNA sequences. Subsets of highly similar profi...
Szymon M. Kielbasa, Didier Gonze, Hanspeter Herzel
BMCBI
2011
15 years 1 months ago
Motif-guided sparse decomposition of gene expression data for regulatory module identification
Background: Genes work coordinately as gene modules or gene networks. Various computational approaches have been proposed to find gene modules based on gene expression data; for e...
Ting Gong, Jianhua Xuan, Li Chen, Rebecca B. Riggi...
NAR
2011
214views Computer Vision» more  NAR 2011»
14 years 9 months ago
DAnCER: Disease-Annotated Chromatin Epigenetics Resource
Chromatin modification (CM) is a set of epigenetic processes that govern many aspects of DNA replication, transcription and repair. CM is carried out by groups of physically inter...
Andrei L. Turinsky, Brian Turner, Rosanne C. Borja...
GECCO
2007
Springer
200views Optimization» more  GECCO 2007»
16 years 13 days ago
Performance analysis of niching algorithms based on derandomized-ES variants
A survey of niching algorithms, based on 5 variants of derandomized Evolution Strategies (ES), is introduced. This set of niching algorithms, ranging from the very first derandom...
Ofer M. Shir, Thomas Bäck
AAAI
1996
15 years 7 months ago
A Clinician's Tool for Analyzing Non-Compliance
We describe a computer program to assist a clinician with assessing the e cacy of treatments in experimental studies for which treatment assignment is random but subject complianc...
David Maxwell Chickering, Judea Pearl