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BMCBI
2011
15 years 1 months ago
ASPDock: protein-protein docking algorithm using atomic solvation parameters model
Background: Atomic Solvation Parameters (ASP) model has been proven to be a very successful method of calculating the binding free energy of protein complexes. This suggests that ...
Lin Li, Dachuan Guo, Yangyu Huang, Shiyong Liu, Yi...
SIGSOFT
2008
ACM
16 years 7 months ago
Javert: fully automatic mining of general temporal properties from dynamic traces
Program specifications are important for many tasks during software design, development, and maintenance. Among these, temporal specifications are particularly useful. They expres...
Mark Gabel, Zhendong Su
ASPLOS
2009
ACM
16 years 7 months ago
Commutativity analysis for software parallelization: letting program transformations see the big picture
Extracting performance from many-core architectures requires software engineers to create multi-threaded applications, which significantly complicates the already daunting task of...
Farhana Aleen, Nathan Clark
HPCA
2008
IEEE
16 years 6 months ago
Fundamental performance constraints in horizontal fusion of in-order cores
A conceptually appealing approach to supporting a broad range of workloads is a system comprising many small cores that can be fused, on demand, into larger cores. We demonstrate ...
Pierre Salverda, Craig B. Zilles
SIGMOD
2005
ACM
166views Database» more  SIGMOD 2005»
16 years 6 months ago
Substructure Similarity Search in Graph Databases
Advanced database systems face a great challenge raised by the emergence of massive, complex structural data in bioinformatics, chem-informatics, and many other applications. The ...
Xifeng Yan, Philip S. Yu, Jiawei Han