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» The complexity of stochastic sequences
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EDBT
2009
ACM
170views Database» more  EDBT 2009»
15 years 10 months ago
Efficient constraint evaluation in categorical sequential pattern mining for trajectory databases
The classic Generalized Sequential Patterns (GSP) algorithm returns all frequent sequences present in a database. However, usually a few ones are interesting from a user's po...
Leticia I. Gómez, Alejandro A. Vaisman
BMCBI
2006
172views more  BMCBI 2006»
15 years 6 months ago
BioWarehouse: a bioinformatics database warehouse toolkit
Background: This article addresses the problem of interoperation of heterogeneous bioinformatics databases. Results: We introduce BioWarehouse, an open source toolkit for construc...
Thomas J. Lee, Yannick Pouliot, Valerie Wagner, Pr...
BMCBI
2006
202views more  BMCBI 2006»
15 years 6 months ago
DWARF - a data warehouse system for analyzing protein families
Background: The emerging field of integrative bioinformatics provides the tools to organize and systematically analyze vast amounts of highly diverse biological data and thus allo...
Markus Fischer, Quan K. Thai, Melanie Grieb, J&uum...
BMCBI
2007
96views more  BMCBI 2007»
15 years 6 months ago
Features generated for computational splice-site prediction correspond to functional elements
Background: Accurate selection of splice sites during the splicing of precursors to messenger RNA requires both relatively well-characterized signals at the splice sites and auxil...
Rezarta Islamaj Dogan, Lise Getoor, W. John Wilbur...
BMCBI
2007
120views more  BMCBI 2007»
15 years 6 months ago
Quantitative sequence-function relationships in proteins based on gene ontology
Background: The relationship between divergence of amino-acid sequence and divergence of function among homologous proteins is complex. The assumption that homologs share function...
Vineet Sangar, Daniel J. Blankenberg, Naomi Altman...