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» The complexity of stochastic sequences
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BMCBI
2010
96views more  BMCBI 2010»
15 years 6 months ago
ModuleOrganizer: detecting modules in families of transposable elements
Background: Most known eukaryotic genomes contain mobile copied elements called transposable elements. In some species, these elements account for the majority of the genome seque...
Sébastien Tempel, Christine Rousseau, Fariz...
BMCBI
2010
126views more  BMCBI 2010»
15 years 6 months ago
Cgaln: fast and space-efficient whole-genome alignment
Background: Whole-genome sequence alignment is an essential process for extracting valuable information about the functions, evolution, and peculiarities of genomes under investig...
Ryuichiro Nakato, Osamu Gotoh
BMCBI
2010
100views more  BMCBI 2010»
15 years 6 months ago
Using genomic signatures for HIV-1 sub-typing
Background: Human Immunodeficiency Virus type 1 (HIV-1), the causative agent of Acquired Immune Deficiency Syndrome (AIDS), exhibits very high genetic diversity with different var...
Aridaman Pandit, Somdatta Sinha
CORR
2008
Springer
114views Education» more  CORR 2008»
15 years 6 months ago
Temporal Support of Regular Expressions in Sequential Pattern Mining
Classic algorithms for sequential pattern discovery, return all frequent sequences present in a database. Since, in general, only a few ones are interesting from a user's poin...
Leticia I. Gómez, Bart Kuijpers, Alejandro ...
BMCBI
2006
121views more  BMCBI 2006»
15 years 6 months ago
Splice site identification using probabilistic parameters and SVM classification
Background: Recent advances and automation in DNA sequencing technology has created a vast amount of DNA sequence data. This increasing growth of sequence data demands better and ...
A. K. M. A. Baten, Bill C. H. Chang, Saman K. Halg...