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» The complexity of stochastic sequences
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BIRD
2008
Springer
162views Bioinformatics» more  BIRD 2008»
15 years 8 months ago
Suffix Tree Characterization of Maximal Motifs in Biological Sequences
Finding motifs in biological sequences is one of the most intriguing problems for string algorithms designers due to, on the one hand, the numerous applications of this problem in...
Maria Federico, Nadia Pisanti
BMCBI
2008
123views more  BMCBI 2008»
15 years 6 months ago
A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences
Background: The structure of many eukaryotic cell regulatory proteins is highly modular. They are assembled from globular domains, segments of natively disordered polypeptides and...
Claudia Chica, Alberto Labarga, Cathryn M. Gould, ...
BMCBI
2006
143views more  BMCBI 2006»
15 years 6 months ago
Fast estimation of the difference between two PAM/JTT evolutionary distances in triplets of homologous sequences
Background: The estimation of the difference between two evolutionary distances within a triplet of homologs is a common operation that is used for example to determine which of t...
Christophe Dessimoz, Manuel Gil, Adrian Schneider,...
BMCBI
2005
100views more  BMCBI 2005»
15 years 6 months ago
Scoredist: A simple and robust protein sequence distance estimator
Background: Distance-based methods are popular for reconstructing evolutionary trees thanks to their speed and generality. A number of methods exist for estimating distances from ...
Erik L. L. Sonnhammer, Volker Hollich
GI
2009
Springer
15 years 4 months ago
AnToNIa: A Software Tool for the Hemodynamic Analysis of Cerebral Vascular Malformations Using 3D and 4D MRA Image Sequences
Abstract: Stroke is the second most common cause of death and major cause of disability worldwide. Approx. 20% of cerebral strokes are caused by hemorrhages due to rupture of cereb...
Nils Daniel Forkert, Dennis Säring, Jens Fieh...