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» The complexity of stochastic sequences
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ICCV
2009
IEEE
15 years 4 months ago
Robust dynamical model for simultaneous registration and segmentation in a variational framework: A Bayesian approach
We introduce a dynamical model for simultaneous registration and segmentation in a variational framework for image sequences, where the dynamics is incorporated using a Bayesian f...
Pratim Ghosh, Mehmet Emre Sargin, Bangalore S. Man...
IPPS
2007
IEEE
16 years 22 days ago
Reconfigurable Architecture for Biological Sequence Comparison in Reduced Memory Space
DNA sequence alignment is a very important problem in bioinformatics. The algorithm proposed by Smith-Waterman (SW) is an exact method that obtains optimal local alignments in qua...
Azzedine Boukerche, Jan Mendonca Correa, Alba Cris...
WABI
2007
Springer
139views Bioinformatics» more  WABI 2007»
16 years 16 days ago
Computability of Models for Sequence Assembly
Graph-theoretic models have come to the forefront as some of the most powerful and practical methods for sequence assembly. Simultaneously, the computational hardness of the underl...
Paul Medvedev, Konstantinos Georgiou, Gene Myers, ...
COMAD
2008
15 years 8 months ago
REBMEC: Repeat Based Maximum Entropy Classifier for Biological Sequences
An important problem in biological data analysis is to predict the family of a newly discovered sequence like a protein or DNA sequence, using the collection of available sequence...
Pratibha Rani, Vikram Pudi
RECOMB
2009
Springer
16 years 7 months ago
Simultaneous Alignment and Folding of Protein Sequences
Abstract. Accurate comparative analysis tools for low-homology proteins remains a difficult challenge in computational biology, especially sequence alignment and consensus folding ...
Bonnie Berger, Charles W. O'Donnell, Jér&oc...