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» The complexity of stochastic sequences
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BMCBI
2007
122views more  BMCBI 2007»
15 years 6 months ago
Dissecting complex transcriptional responses using pathway-level scores based on prior information
Background: The genomewide pattern of changes in mRNA expression measured using DNA microarrays is typically a complex superposition of the response of multiple regulatory pathway...
Harmen J. Bussemaker, Lucas D. Ward, André ...
FUN
2010
Springer
233views Algorithms» more  FUN 2010»
15 years 11 months ago
The Complexity of Flood Filling Games
We study the complexity of the popular one player combinatorial game known as Flood-It. In this game the player is given an n×n board of tiles where each tile is allocated one of ...
David Arthur, Raphaël Clifford, Markus Jalsen...
BMCBI
2007
88views more  BMCBI 2007»
15 years 6 months ago
Use of DNA melting simulation software for in silico diagnostic assay design: targeting regions with complex melting curves and
Background: DNA melting curve analysis using double-stranded DNA-specific dyes such as SYTO9 produce complex and reproducible melting profiles, resulting in the detection of multi...
John P. Rasmussen, Christopher P. Saint, Paul T. M...
BMCBI
2006
150views more  BMCBI 2006»
15 years 6 months ago
CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between clos
Background: The recent accumulation of closely related genomic sequences provides a valuable resource for the elucidation of the evolutionary histories of various organisms. Howev...
Ikuo Uchiyama, Toshio Higuchi, Ichizo Kobayashi
FSE
2005
Springer
84views Cryptology» more  FSE 2005»
15 years 12 months ago
Some Attacks on the Bit-Search Generator
The bit-search generator (BSG) was proposed in 2004 and can be seen as a variant of the shrinking and self-shrinking generators. It has the advantage that it works at rate 1/3 usin...
Martin Hell, Thomas Johansson