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BMCBI
2005
212views more  BMCBI 2005»
15 years 6 months ago
PAGE: Parametric Analysis of Gene Set Enrichment
Background: Gene set enrichment analysis (GSEA) is a microarray data analysis method that uses predefined gene sets and ranks of genes to identify significant biological changes i...
Seon-Young Kim, David J. Volsky
BMCBI
2004
142views more  BMCBI 2004»
15 years 6 months ago
GOTree Machine (GOTM): a web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies
Background: Microarray and other high-throughput technologies are producing large sets of interesting genes that are difficult to analyze directly. Bioinformatics tools are needed...
Bing Zhang, Denise Schmoyer, Stefan Kirov, Jay Sno...
BMCBI
2011
15 years 1 months ago
Appearance frequency modulated gene set enrichment testing
Background: Gene set enrichment testing has helped bridge the gap from an individual gene to a systems biology interpretation of microarray data. Although gene sets are defined a ...
Jun Ma, Maureen A. Sartor, H. V. Jagadish
ICDE
2012
IEEE
267views Database» more  ICDE 2012»
13 years 9 months ago
Scalable and Numerically Stable Descriptive Statistics in SystemML
—With the exponential growth in the amount of data that is being generated in recent years, there is a pressing need for applying machine learning algorithms to large data sets. ...
Yuanyuan Tian, Shirish Tatikonda, Berthold Reinwal...
COMPGEOM
2009
ACM
16 years 1 months ago
Near-linear approximation algorithms for geometric hitting sets
Given a set system (X, R), the hitting set problem is to find a smallest-cardinality subset H ⊆ X, with the property that each range R ∈ R has a non-empty intersection with H...
Pankaj K. Agarwal, Esther Ezra, Micha Sharir