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BMCBI
2008
211views more  BMCBI 2008»
15 years 6 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
SP
2008
IEEE
112views Security Privacy» more  SP 2008»
16 years 1 months ago
XFA: Faster Signature Matching with Extended Automata
Automata-based representations and related algorithms have been applied to address several problems in information security, and often the automata had to be augmented with additi...
Randy Smith, Cristian Estan, Somesh Jha
ISPASS
2009
IEEE
16 years 1 months ago
WARP: Enabling fast CPU scheduler development and evaluation
Abstract—Developing CPU scheduling algorithms and understanding their impact in practice can be difficult and time consuming due to the need to modify and test operating system ...
Haoqiang Zheng, Jason Nieh
JSAT
2010
108views more  JSAT 2010»
15 years 1 months ago
Experiment design and administration for computer clusters for SAT-solvers (EDACC)
The design of a SAT-solver or the modification of an existing one is always followed by a phase of intensive testing of the solver on a benchmark of instances. This task can be ve...
Adrian Balint, Daniel Gall, Gregor Kapler, Robert ...
APBC
2004
122views Bioinformatics» more  APBC 2004»
15 years 8 months ago
Evolution of Relative Synonymous Codon Usage in Human Immunodeficiency Virus Type 1
Mutation in HIV-1 is extremely rapid, a consequence of a low-fidelity viral reverse transcription process. The envelope gene has been shown to accumulate substitutions at a rate o...
Peter L. Meintjes, Allen G. Rodrigo