Mechanistic models for transcriptional regulation are derived using the methods of equilibrium statistical mechanics, to model equilibrating processes that occur at a fast time sc...
We describe a (meta) formalism for defining a variety of (object oriented) data models in a unified framework based on a variation of first-order logic. As specific example we use...
This paper presents recursive cavity modeling--a principled, tractable approach to approximate, near-optimal inference for large Gauss-Markov random fields. The main idea is to su...
Abstract. Recently the field of theory update has seen some improvement, in what concerns model updating, by allowing updates to be specified by so-called revision programs. The ...
Background: Many biological networks such as protein-protein interaction networks, signaling networks, and metabolic networks have topological characteristics of a scale-free degr...