Computational and comparative analysis of protein-protein interaction (PPI) networks enable understanding of the modular organization of the cell through identification of functio...
This paper proposes a parameterized algorithm for aligning two protein structures, in the case where one protein structure is represented by a contact map graph and the other by a ...
Abstract. With ever increasing amount of available data on protein-protein interaction (PPI) networks and research revealing that these networks evolve at a modular level, discover...
In the MINIMUM BOUNDED DEGREE SPANNING TREE problem, we are given an undirected graph with a degree upper bound Bv on each vertex v, and the task is to find a spanning tree of min...
There are many local and greedy algorithms for energy minimization over Markov Random Field (MRF) such as iterated condition mode (ICM) and various gradient descent methods. Local ...