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APN
1993
Springer
15 years 10 months ago
Coloured Petri Nets Extended with Place Capacities, Test Arcs and Inhibitor Arcs
In this paper we show how to extend Coloured Petri Nets (CP-nets), with three new modelling primitives—place capacities, test arcs and inhibitor arcs. The new modelling primitiv...
Søren Christensen, Niels Damgaard Hansen
BMCBI
2006
153views more  BMCBI 2006»
15 years 6 months ago
Intensity-based hierarchical Bayes method improves testing for differentially expressed genes in microarray experiments
Background: The small sample sizes often used for microarray experiments result in poor estimates of variance if each gene is considered independently. Yet accurately estimating v...
Maureen A. Sartor, Craig R. Tomlinson, Scott C. We...
JCB
2000
103views more  JCB 2000»
15 years 6 months ago
Testing for Differentially-Expressed Genes by Maximum-Likelihood Analysis of Microarray Data
Although two-color uorescent DNA microarrays are now standard equipment in many molecular biology laboratories, methods for identifying differentially expressed genes in microarra...
Trey Ideker, Vesteinn Thorsson, Andrew F. Siegel, ...
BMCBI
2011
15 years 1 months ago
Appearance frequency modulated gene set enrichment testing
Background: Gene set enrichment testing has helped bridge the gap from an individual gene to a systems biology interpretation of microarray data. Although gene sets are defined a ...
Jun Ma, Maureen A. Sartor, H. V. Jagadish
ICML
2003
IEEE
16 years 7 months ago
Learning on the Test Data: Leveraging Unseen Features
This paper addresses the problem of classification in situations where the data distribution is not homogeneous: Data instances might come from different locations or times, and t...
Benjamin Taskar, Ming Fai Wong, Daphne Koller