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COLING
2010
15 years 1 months ago
Varro: An Algorithm and Toolkit for Regular Structure Discovery in Treebanks
The Varro toolkit is a system for identifying and counting a major class of regularity in treebanks and annotated natural language data in the form of treestructures: frequently r...
Scott Martens
BMCBI
2011
14 years 10 months ago
Proteinortho: Detection of (Co-)Orthologs in Large-Scale Analysis
Background: Orthology analysis is an important part of data analysis in many areas of bioinformatics such as comparative genomics and molecular phylogenetics. The ever-increasing ...
Marcus Lechner, Sven Findeiß, Lydia Steiner,...
BMCBI
2011
14 years 10 months ago
Efficient alignment of pyrosequencing reads for re-sequencing applications
Background: Over the past few years, new massively parallel DNA sequencing technologies have emerged. These platforms generate massive amounts of data per run, greatly reducing th...
Francisco Fernandes, Paulo G. S. da Fonseca, Lu&ia...
BMCBI
2011
14 years 10 months ago
Smith-Waterman Peak Alignment for Comprehensive Two-dimensional Gas Chromatography Mass Spectrometry
Background: Comprehensive two-dimensional gas chromatography coupled with mass spectrometry (GC × GCMS) is a powerful technique which has gained increasing attention over the las...
Seongho Kim, Imhoi Koo, Aiqin Fang, Xiang Zhang
IWMM
2011
Springer
270views Hardware» more  IWMM 2011»
14 years 9 months ago
Memory management in NUMA multicore systems: trapped between cache contention and interconnect overhead
Multiprocessors based on processors with multiple cores usually include a non-uniform memory architecture (NUMA); even current 2-processor systems with 8 cores exhibit non-uniform...
Zoltan Majo, Thomas R. Gross