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RECOMB
2007
Springer
16 years 6 months ago
Production-Passage-Time Approximation: A New Approximation Method to Accelerate the Simulation Process of Enzymatic Reactions
Abstract. Given the substantial computational requirements of stochastic simulation, approximation is essential for efficient analysis of any realistic biochemical system. This pap...
Hiroyuki Kuwahara, Chris J. Myers
RECOMB
2006
Springer
16 years 6 months ago
RNA Secondary Structure Prediction Via Energy Density Minimization
Abstract. There is a resurgence of interest in RNA secondary structure prediction problem (a.k.a. the RNA folding problem) due to the discovery of many new families of non-coding R...
Can Alkan, Emre Karakoç, Süleyman Cenk...
OSDI
2006
ACM
16 years 6 months ago
Flight Data Recorder: Monitoring Persistent-State Interactions to Improve Systems Management
Mismanagement of the persistent state of a system--all the executable files, configuration settings and other data that govern how a system functions--causes reliability problems,...
Chad Verbowski, Emre Kiciman, Arunvijay Kumar, Bra...
ICALP
2009
Springer
16 years 6 months ago
External Sampling
We initiate the study of sublinear-time algorithms in the external memory model [14]. In this model, the data is stored in blocks of a certain size B, and the algorithm is charged...
Alexandr Andoni, Piotr Indyk, Krzysztof Onak, Roni...
VLDB
2005
ACM
152views Database» more  VLDB 2005»
16 years 6 months ago
Composing, optimizing, and executing plans for bioinformatics web services
The emergence of a large number of bioinformatics datasets on the Internet has resulted in the need for flexible and efficient approaches to integrate information from multiple bio...
Snehal Thakkar, José Luis Ambite, Craig A. Knoblo...
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