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ICPP
2007
IEEE
16 years 1 months ago
Efficient Parallel Algorithm for Optimal Three-Sequences Alignment
Sequence alignment is a fundamental problem in the computational biology. Many alignment methods have been proposed in the literature, such as pair-wise sequence alignment (2SA), ...
Chun-Yuan Lin, Chen Tai Huang, Yeh-Ching Chung, Ch...
IPPS
2007
IEEE
16 years 1 months ago
An Optimizing Compiler for Parallel Chemistry Simulations
Well designed domain specific languages enable the easy expression of problems, the application of domain specific optimizations, and dramatic improvements in productivity for t...
Jun Cao, Ayush Goyal, Samuel P. Midkiff, James M. ...
IPPS
2007
IEEE
16 years 1 months ago
POET: Parameterized Optimizations for Empirical Tuning
The excessive complexity of both machine architectures and applications have made it difficult for compilers to statically model and predict application behavior. This observatio...
Qing Yi, Keith Seymour, Haihang You, Richard W. Vu...
PDCAT
2004
Springer
16 years 5 days ago
GridCrypt: High Performance Symmetric Key Cryptography Using Enterprise Grids
Today’s cryptanalysis on symmetric key cryptography is encouraging the use of larger key sizes and complex algorithms to achieve an unbreakable state. However, this leads an inc...
Agus Setiawan, David Adiutama, Julius Liman, Aksha...
PDCAT
2004
Springer
16 years 5 days ago
An In-Order SMT Architecture with Static Resource Partitioning for Consumer Applications
Abstract. This paper proposes a simplified simultaneous multithreading (SMT) architecture aiming at CPU cores of embedded SoCs for consumer applications. This architecture reduces...
Byung In Moon, Hongil Yoon, Ilgun Yun, Sungho Kang