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BMCBI
2005
130views more  BMCBI 2005»
15 years 6 months ago
Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome
Background: This paper addresses the problem of recognising DNA cis-regulatory modules which are located far from genes. Experimental procedures for this are slow and costly, and ...
Irina I. Abnizova, Rene te Boekhorst, Klaudia Walt...
JACM
2007
132views more  JACM 2007»
15 years 6 months ago
Dynamic ordered sets with exponential search trees
We introduce exponential search trees as a novel technique for converting static polynomial space search structures for ordered sets into fully-dynamic linear space data structure...
Arne Andersson, Mikkel Thorup
JAIR
2007
117views more  JAIR 2007»
15 years 6 months ago
On the Formal Semantics of Speech-Act Based Communication in an Agent-Oriented Programming Language
Research on agent communication languages has typically taken the speech acts paradigm as its starting point. Despite their manifest attractions, speech-act models of communicatio...
Renata Vieira, Álvaro F. Moreira, Michael W...
BMCBI
2005
158views more  BMCBI 2005»
15 years 6 months ago
Automated generation of heuristics for biological sequence comparison
Background: Exhaustive methods of sequence alignment are accurate but slow, whereas heuristic approaches run quickly, but their complexity makes them more difficult to implement. ...
Guy St. C. Slater, Ewan Birney
BMCBI
2005
100views more  BMCBI 2005»
15 years 6 months ago
Scoredist: A simple and robust protein sequence distance estimator
Background: Distance-based methods are popular for reconstructing evolutionary trees thanks to their speed and generality. A number of methods exist for estimating distances from ...
Erik L. L. Sonnhammer, Volker Hollich
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